1. HiCcompare::HMEC.chr10
    Hi-C data from HMEC cell line - chromosome 10 at 500kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35386 x 3
  2. HiCcompare::HMEC.chr22
    Hi-C data from HMEC cell line - chromosome 22 at 500kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2490 x 3
  3. HiCcompare::NHEK.chr10
    Hi-C data from NHEK cell line - chromosome 10 at 500kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35510 x 3
  4. HiCcompare::NHEK.chr22
    Hi-C data from NHEK cell line - chromosome 22 at 500kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2508 x 3
  5. HiCcompare::brain_table
    Hi-C data from two regions of the brain at 100KB resolution
    csv| json| rda| rds
    list
  6. HiCcompare::centromere_locations
    Locations of the centromeres for hg19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  7. HiCcompare::cooler
    Hi-C data in the cooler format
    csv| xlsx| json| ndjson| rda| rds
    data.frame|217230 x 7
  8. HiCcompare::hg19_blacklist
    BED file for hg19 blacklisted regions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1649 x 3
  9. HiCcompare::hg38_blacklist
    BED file for hg38 blacklisted regions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38 x 3
  10. HiCcompare::hmec.IS
    Hi-C data from HMEC cell line - chromosome 22 at 500kb resolution
    rda| rds
    GInteractions
  11. HiCcompare::nhek.IS
    Hi-C data from NHEK cell line - chromosome 22 at 500kb resolution
    rda| rds
    GInteractions
  12. multiHiCcompare::HCT116_r1
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56603 x 4
  13. multiHiCcompare::HCT116_r2
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|57010 x 4
  14. multiHiCcompare::HCT116_r3
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56744 x 4
  15. multiHiCcompare::HCT116_r4
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|54307 x 4
  16. multiHiCcompare::HCT116_r5
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55092 x 4
  17. multiHiCcompare::HCT116_r6
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55581 x 4
  18. multiHiCcompare::hg19_cyto
    A GenomicRanges object containing centromeric, gvar, and stalk regions.
    rda| rds
    GRanges
  19. multiHiCcompare::hg38_cyto
    A GenomicRanges object containing centromeric, gvar, and stalk regions.
    rda| rds
    GRanges
  20. multiHiCcompare::hicexp2
    hicexp object with 4 samples from two groups.
    rda| rds
    Hicexp
  21. multiHiCcompare::hicexp_diff
    hicexp object with 7 samples from two groups.
    rda| rds
    Hicexp
  22. preciseTAD::arrowhead_gm12878_5kb
    Domain data from ARROWHEAD TAD-caller for GM12878 at 5 kb
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8409 x 3
  23. preciseTAD::tfbsList
    A list of the chromosomal coordinates for 26 transcription factor binding sites from the Gm12878 cell line
    rda| rds
    CompressedGRangesList
  24. SpectralTAD::rao_chr20_25_rep
    Contact matrix from Rao 2014, chromosome 20, 25kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2125980 x 3
  25. TADCompare::GM12878.40kb.raw.chr2
    A subset of chomosome 2 contact matrix, GM12878 cell line.
    csv| json| rda| rds
    matrix|1001 x 1001
  26. TADCompare::IMR90.40kb.raw.chr2
    A subset of chomosome 2 contact matrix, IMR90 cell line.
    csv| json| rda| rds
    matrix|1001 x 1001
  27. TADCompare::rao_chr22_prim
    Chromosome 22 combined intrachromosomal primary contact matrix from Rao et al. 2014.
    csv| json| rda| rds
    matrix|704 x 704
  28. TADCompare::rao_chr22_rep
    Chromosome 22 combined intrachromosomal replicate contact matrix from Rao et al. 2014.
    csv| json| rda| rds
    matrix|704 x 704
  29. TADCompare::time_mats
    Chromosome 22 time-varying contact matrices from Rao et al. 2017.
    csv| json| rda| rds
    list